R 3.6 docker personalizzato

 Un esempio di Dockerfile complesso per R 3.6

FROM rstudio/r-base:3.6-bookworm

ARG DEBIAN_FRONTEND=noninteractive

RUN apt-get -y update

RUN apt-get -y install gdal-bin libgdal-dev libpng-dev libudunits2-dev libfontconfig1-dev libmagick++-dev openjdk-17-jdk apache2 mc nano locales && apt-get clean

RUN service apache2 restart

#ENTRYPOINT ["/usr/sbin/apache2", "-k", "start"]

ENV APACHE_RUN_USER www-data

ENV APACHE_RUN_GROUP www-data

ENV APACHE_LOG_DIR /var/log/apache2

EXPOSE 80

CMD ["apachectl", "-D", "FOREGROUND"]

CMD apachectl -D FOREGROUND

# installa client Oracle

RUN wget https://download.oracle.com/otn_software/java/sqldeveloper/sqlcl-23.2.0.178.1027.zip && unzip sqlcl*.zip

ENV PATH=sqlcl/bin:$PATH

#imposta la localizzazione italiana

RUN sed -i -e 's/# it_IT.UTF-8 UTF-8/it_IT.UTF-8 UTF-8/' /etc/locale.gen && locale-gen

ENV LANG it_IT.UTF-8

ENV LANGUAGE it_IT:it

ENV LC_ALL it_IT.UTF-8

# imposta la timezone a Europe/Rome

ENV TZ="Europe/Rome"

# scarica il sorgente della libreria non presente su CRAN

RUN curl -O "https://cran.r-project.org/src/contrib/Archive/randomForest/randomForest_4.6-10.tar.gz"

#setup R configs

RUN echo "r <- getOption('repos'); r['CRAN'] <- 'http://cran.us.r-project.org'; options(repos = r);" > ~/.Rprofile

RUN Rscript -e "install.packages('zoo')"

RUN Rscript -e "install.packages('leaflet')"

RUN Rscript -e "install.packages('sf')"

RUN Rscript -e "install.packages('leafpop')"

RUN Rscript -e "install.packages('forecast')"

RUN Rscript -e "install.packages('stringr')"

RUN Rscript -e "install.packages('lubridate')"

RUN Rscript -e "install.packages('randomForest_4.6-10.tar.gz', repos = NULL, type='source')"

RUN Rscript -e "install.packages('rpart')"

RUN Rscript -e "install.packages('e1071')"

RUN Rscript -e "install.packages('kknn')"

RUN Rscript -e "install.packages('jpeg')"

RUN Rscript -e "install.packages('data.table')"

RUN Rscript -e "install.packages('tidyr')"

RUN Rscript -e "install.packages('magick')"

RUN Rscript -e "install.packages('leaflet.extras')"

RUN Rscript -e "install.packages('leafem')"

RUN Rscript -e "install.packages('raster')"

# copia i file

ADD go.sh /root/go.sh

ADD omnia_apuane_spool.sql /root/omnia_apuane_spool.sql

ADD omnia_apuane.R /root/omnia_apuane.R

ADD omnia_arno.R /root/omnia_arno.R

ADD omnia_laguna.R /root/omnia_laguna.R

#crea folders in html

RUN mkdir /var/www/html/mappe

RUN mkdir /var/www/html/mappe/omnia_apuane

RUN mkdir /var/www/html/Acque

RUN mkdir /var/www/html/Acque/LAGUNA

RUN mkdir /var/www/html/Acque/ARNO

RUN mkdir /var/www/html/Acque/ARNO/bollettini

# per il ROracle

ADD instantclient-basic-linux.x64-21.11.0.0.0dbru.zip instantclient-basic-linux.x64-21.11.0.0.0dbru.zip

ADD instantclient-sdk-linux.x64-21.11.0.0.0dbru.zip instantclient-sdk-linux.x64-21.11.0.0.0dbru.zip

# ATTENZIONE il comando ADD decompatta in automatico

# i file tar.gz. Per questo motivo la riga successiva usa COPY

COPY ROracle_1.3-2_R_x86_64-linux-gnu.tar.gz /root/ROracle_1.3-2_R_x86_64-linux-gnu.tar.gz

RUN unzip instantclient-basic-linux.x64-21.11.0.0.0dbru.zip -d /opt/oracle/

RUN unzip instantclient-sdk-linux.x64-21.11.0.0.0dbru.zip -d /opt/oracle/

RUN apt-get install -y libaio1

ENV PATH="${PATH}:/opt/oracle/instantclient_21_11"

ENV LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/opt/oracle/instantclient_21_11"

RUN ldconfig

# compila ROracle

RUN Rscript -e 'install.packages("/root/ROracle_1.3-2_R_x86_64-linux-gnu.tar.gz",repos=NULL,type="source")'

RUN Rscript -e "install.packages('RCurl')"

RUN Rscript -e "install.packages('stringr')"

#cancella i file temporanei

RUN rm randomForest_4.6-10.tar.gz

RUN rm sqlcl*.zip

RUN rm /root/*.tar.gz

RUN rm /root/*.zip